7.1. pyafv

PyAFV - A Python implementation of the active finite Voronoi (AFV) model in 2D.

Classes

PhysicalParams([r, A0, P0, KA, KP, Lambda, ...])	Physical parameters for the active finite Voronoi (AFV) model.
FiniteVoronoiSimulator(pts, phys[, backend])	Simulator for the active finite Voronoi (AFV) model.

Functions

visualize_2d(pts, diag, r[, ax])	Visualize a 2D snapshot using the diagnostic dict diag generated by pyafv.FiniteVoronoiSimulator.build().
target_delta(params, target_force)	Given the physical parameters and a target detachment force, compute the corresponding delta.

Subpackages

calibrate

Subpackage for calibrating the detachment forces against the deformable polygon (DP) model.

Experimental API (use with caution)

tile_pbc(pts, L[, r])	Periodic tiling of pts (N,2), with bookkeeping.
rebuild_connection_matrix(N, connect)	Build a symmetric sparse adjacency matrix from a cell-cell edge list.
select_daughter_cluster(N, connect)	Randomly pick one connected component ("daughter cluster") from the connectivity graph.
get_cluster_sizes(N, connect)	Compute the sizes of all connected components in the connectivity graph.